Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dclre1bDNA cross-link repair 1B. (586 aa)    
Predicted Functional Partners:
terf2ip
Uncharacterized protein.
    
 
 0.988
LOC113024563
HTH myb-type domain-containing protein.
    
 
 0.962
ENSACLP00000018225
TRF domain-containing protein.
    
 
 0.962
ENSACLP00000016373
TERF1 (TRF1)-interacting nuclear factor 2.
   
 
 0.942
ENSACLP00000021335
Protection of telomeres 1 homolog.
   
 
 0.930
xrcc5
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.912
lig4
DNA ligase.
   
 0.898
ENSACLP00000013446
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.869
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.861
mus81
MUS81 structure-specific endonuclease subunit.
  
 0.857
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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