STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dclre1bDNA cross-link repair 1B. (586 aa)    
Predicted Functional Partners:
LOC113024563
HTH myb-type domain-containing protein.
    
 
 0.943
ENSACLP00000018225
TRF domain-containing protein.
    
 
 0.943
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.938
xrcc5
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.931
sympk
Symplekin.
   
 0.929
lig4
DNA ligase.
   
 0.925
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.924
ints4
Integrator complex subunit 4.
   
 0.921
LOC113024099
FIP1 like 1b (S. cerevisiae).
    
 0.916
lig1
DNA ligase.
  
 0.893
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.