Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113036567Crystallin beta gamma X; Belongs to the beta/gamma-crystallin family. (207 aa)    
Predicted Functional Partners:
ENSACLP00000010817
Crystallin, alpha A; Belongs to the small heat shock protein (HSP20) family.
      
 0.662
ENSACLP00000021582
Uncharacterized protein.
      
 0.600
rax
Retinal homeobox gene 3.
      
 0.498
LOC113009273
Wu:fc23c09.
      
 0.413
LOC113026284
Cryptochrome circadian regulator 2.
      
 0.412
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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