Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD2Neurogenic differentiation factor. (359 aa)    
Predicted Functional Partners:
dcx
Uncharacterized protein.
   
  
 0.664
TCF4
Transcription factor 4.
    
 
 0.624
LOC113010171
Transcription factor 3a.
    
 
 0.624
tcf12
Transcription factor 12.
    
 
 0.624
LOC113016192
Transcription factor 3b.
    
 
 0.624
LOC113026641
BHLH domain-containing protein.
    
 
 0.592
ENSACLP00000017965
Hairy-related 8.2.
    
 0.579
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
      
 0.574
nkx2-5
NK2 homeobox 5.
   
 0.565
LOC113010672
Uncharacterized protein.
    
 0.556
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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