STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113030467Neurotrimin. (356 aa)    
Predicted Functional Partners:
iglon5
IgLON family member 5.
    
 
0.611
LOC113030565
Slit homolog 3 (Drosophila).
    
  0.480
slit1
Slit homolog 1a (Drosophila).
    
  0.480
LOC113024679
Slit homolog 1b (Drosophila).
    
  0.480
nyx
Nyctalopin.
    
  0.480
ENSACLP00000024091
Slit homolog 2 (Drosophila).
    
  0.480
SLITRK1
SLIT and NTRK like family member 1.
   
 0.477
LOC113013517
Erb-b2 receptor tyrosine kinase 3b.
    
  0.460
ENSACLP00000014200
Receptor protein-tyrosine kinase.
    
  0.460
ENSACLP00000015318
Receptor protein-tyrosine kinase.
    
  0.460
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.