LOC113020914 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

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[Homology]

Score

LOC113020914

Uncharacterized protein. (387 aa)

Predicted Functional Partners:

ENSACLP00000019390

0.980

suox

0.870

LOC113034125

0.868

podxl

0.864

ENSACLP00000001571

0.856

LOC113011774

0.856

LOC113030454

0.856

LOC113007393

0.856

EZR

0.856

LOC113014950

0.832

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000001571	ENSACLP00000019390	ENSACLP00000001571	ENSACLP00000019390	FERM domain-containing protein.	Uncharacterized protein.	0.540
ENSACLP00000001571	EZR	ENSACLP00000001571	ENSACLP00000035091	FERM domain-containing protein.	Ezrin b.	0.900
ENSACLP00000001571	LOC113020914	ENSACLP00000001571	ENSACLP00000002889	FERM domain-containing protein.	Uncharacterized protein.	0.856
ENSACLP00000001571	LOC113034125	ENSACLP00000001571	ENSACLP00000036495	FERM domain-containing protein.	Moesin b.	0.822
ENSACLP00000019390	ENSACLP00000001571	ENSACLP00000019390	ENSACLP00000001571	Uncharacterized protein.	FERM domain-containing protein.	0.540
ENSACLP00000019390	EZR	ENSACLP00000019390	ENSACLP00000035091	Uncharacterized protein.	Ezrin b.	0.540
ENSACLP00000019390	LOC113007393	ENSACLP00000019390	ENSACLP00000027121	Uncharacterized protein.	FERM domain-containing protein.	0.540
ENSACLP00000019390	LOC113011774	ENSACLP00000019390	ENSACLP00000001798	Uncharacterized protein.	Ezrin a.	0.540
ENSACLP00000019390	LOC113020914	ENSACLP00000019390	ENSACLP00000002889	Uncharacterized protein.	Uncharacterized protein.	0.980
ENSACLP00000019390	LOC113030454	ENSACLP00000019390	ENSACLP00000011139	Uncharacterized protein.	Moesin a.	0.540
ENSACLP00000019390	suox	ENSACLP00000019390	ENSACLP00000005217	Uncharacterized protein.	Sulfite oxidase.	0.766
EZR	ENSACLP00000001571	ENSACLP00000035091	ENSACLP00000001571	Ezrin b.	FERM domain-containing protein.	0.900
EZR	ENSACLP00000019390	ENSACLP00000035091	ENSACLP00000019390	Ezrin b.	Uncharacterized protein.	0.540
EZR	LOC113007393	ENSACLP00000035091	ENSACLP00000027121	Ezrin b.	FERM domain-containing protein.	0.900
EZR	LOC113020914	ENSACLP00000035091	ENSACLP00000002889	Ezrin b.	Uncharacterized protein.	0.856
EZR	LOC113030454	ENSACLP00000035091	ENSACLP00000011139	Ezrin b.	Moesin a.	0.913
EZR	LOC113034125	ENSACLP00000035091	ENSACLP00000036495	Ezrin b.	Moesin b.	0.858
LOC113007393	ENSACLP00000019390	ENSACLP00000027121	ENSACLP00000019390	FERM domain-containing protein.	Uncharacterized protein.	0.540
LOC113007393	EZR	ENSACLP00000027121	ENSACLP00000035091	FERM domain-containing protein.	Ezrin b.	0.900
LOC113007393	LOC113020914	ENSACLP00000027121	ENSACLP00000002889	FERM domain-containing protein.	Uncharacterized protein.	0.856