LOC113020914 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113020914

Uncharacterized protein. (387 aa)

Predicted Functional Partners:

ENSACLP00000019390

0.954

LOC113034125

0.843

LOC113030350

0.791

nf2

0.791

ENSACLP00000001571

0.782

LOC113011774

0.782

LOC113030454

0.782

LOC113007393

0.782

EZR

0.782

ift57

0.731

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000001571	EZR	ENSACLP00000001571	ENSACLP00000035091	FERM domain-containing protein.	Ezrin b.	0.771
ENSACLP00000001571	LOC113020914	ENSACLP00000001571	ENSACLP00000002889	FERM domain-containing protein.	Uncharacterized protein.	0.782
ENSACLP00000019390	LOC113020914	ENSACLP00000019390	ENSACLP00000002889	Uncharacterized protein.	Uncharacterized protein.	0.954
EZR	ENSACLP00000001571	ENSACLP00000035091	ENSACLP00000001571	Ezrin b.	FERM domain-containing protein.	0.771
EZR	LOC113007393	ENSACLP00000035091	ENSACLP00000027121	Ezrin b.	FERM domain-containing protein.	0.771
EZR	LOC113020914	ENSACLP00000035091	ENSACLP00000002889	Ezrin b.	Uncharacterized protein.	0.782
EZR	LOC113030454	ENSACLP00000035091	ENSACLP00000011139	Ezrin b.	Moesin a.	0.761
LOC113007393	EZR	ENSACLP00000027121	ENSACLP00000035091	FERM domain-containing protein.	Ezrin b.	0.771
LOC113007393	LOC113020914	ENSACLP00000027121	ENSACLP00000002889	FERM domain-containing protein.	Uncharacterized protein.	0.782
LOC113011774	LOC113020914	ENSACLP00000001798	ENSACLP00000002889	Ezrin a.	Uncharacterized protein.	0.782
LOC113020914	ENSACLP00000001571	ENSACLP00000002889	ENSACLP00000001571	Uncharacterized protein.	FERM domain-containing protein.	0.782
LOC113020914	ENSACLP00000019390	ENSACLP00000002889	ENSACLP00000019390	Uncharacterized protein.	Uncharacterized protein.	0.954
LOC113020914	EZR	ENSACLP00000002889	ENSACLP00000035091	Uncharacterized protein.	Ezrin b.	0.782
LOC113020914	LOC113007393	ENSACLP00000002889	ENSACLP00000027121	Uncharacterized protein.	FERM domain-containing protein.	0.782
LOC113020914	LOC113011774	ENSACLP00000002889	ENSACLP00000001798	Uncharacterized protein.	Ezrin a.	0.782
LOC113020914	LOC113030350	ENSACLP00000002889	ENSACLP00000008712	Uncharacterized protein.	Neurofibromin 2b (merlin).	0.791
LOC113020914	LOC113030454	ENSACLP00000002889	ENSACLP00000011139	Uncharacterized protein.	Moesin a.	0.782
LOC113020914	LOC113034125	ENSACLP00000002889	ENSACLP00000036495	Uncharacterized protein.	Moesin b.	0.843
LOC113020914	ift57	ENSACLP00000002889	ENSACLP00000034862	Uncharacterized protein.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.731
LOC113020914	nf2	ENSACLP00000002889	ENSACLP00000033621	Uncharacterized protein.	Neurofibromin 2a (merlin).	0.791