STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfdp1Transcription factor. (413 aa)    
Predicted Functional Partners:
ENSACLP00000016742
E2F transcription factor 4.
   
 0.998
e2f1
E2F transcription factor 1.
   
 0.993
ENSACLP00000025268
Retinoblastoma-like 1 (p107).
   
 0.992
LOC113025000
Retinoblastoma-like 2 (p130).
   
 0.992
rb1
Retinoblastoma 1.
   
 0.991
LOC113010824
E2F transcription factor 5.
   
 0.986
E2F3
E2F transcription factor 3.
   
 0.979
ENSACLP00000020481
E2F_CC-MB domain-containing protein.
   
 0.979
e2f2
Si:ch211-160f23.5.
   
 0.979
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.975
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.