STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pigfPhosphatidylinositol glycan anchor biosynthesis, class F. (219 aa)    
Predicted Functional Partners:
PIGG
Phosphatidylinositol glycan anchor biosynthesis class G.
    
 0.992
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
    
 0.945
pigk
GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.
   
 
 0.934
ENSACLP00000005864
Mannosyltransferase.
     
 0.932
ENSACLP00000036502
Phosphatidylinositol glycan anchor biosynthesis, class T.
     
 0.925
pigs
Phosphatidylinositol glycan anchor biosynthesis, class S.
     
 0.894
gpaa1
Glycosylphosphatidylinositol anchor attachment 1.
     
 0.884
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
     
 0.868
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
  0.851
LOC113021887
Phosphatidylinositol glycan anchor biosynthesis, class U.
     
 0.842
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.