Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSACLP00000002943Cysteine-rich PDZ-binding protein. (140 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.908
phf5a
PHD finger protein 5A.
   
   0.882
sf3b2
Splicing factor 3b, subunit 2.
    
   0.878
prpf8
Pre-mRNA processing factor 8.
    
   0.878
ENSACLP00000033349
Splicing factor 3b, subunit 3.
    
   0.878
sf3b1
Splicing factor 3b, subunit 1.
    
   0.878
rnf113a
Ring finger protein 113A.
    
   0.878
cwc15
CWC15 spliceosome associated protein homolog.
   
   0.805
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
   0.801
sf3b6
Splicing factor 3b, subunit 6.
   
   0.798
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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