Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010138Integrin beta; Belongs to the integrin beta chain family. (824 aa)    
Predicted Functional Partners:
LOC113028545
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.984
LOC113020103
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.984
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
   
 0.980
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.980
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.979
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
   
 0.979
ENSACLP00000008918
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.976
LOC113008160
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
   
 0.976
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
   
 0.976
LOC113012814
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.976
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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