Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mtrexMtr4 exosome RNA helicase. (1037 aa)    
Predicted Functional Partners:
LOC113036866
RNA binding motif protein 7.
    
 0.999
zcchc8
Zinc finger, CCHC domain containing 8.
    
 0.999
exosc10
Exosome component 10.
   
 0.999
ZFC3H1
Zinc finger C3H1-type containing.
    
 0.998
exosc7
Exosome component 7.
   
 0.997
exosc2
Exosome component 2.
   
 0.997
exosc3
Exosome component 3.
   
 0.997
wdr3
WD repeat domain 3.
   
 0.997
exosc4
Exosome component 4.
   
 0.997
exosc8
Exosome component 8.
   
 0.996
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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