STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002998Si:ch1073-396h14.1. (412 aa)    
Predicted Functional Partners:
LOC113026622
ADAM metallopeptidase domain 10b.
  
  
0.841
adam10
Uncharacterized protein.
  
  
0.840
LOC113031642
Tumor necrosis factor b (TNF superfamily, member 2).
     
 0.754
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.729
LOC113020696
TIMP metallopeptidase inhibitor 2b.
    
 0.729
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.729
ENSACLP00000037698
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.655
LOC113034822
Heparin-binding EGF-like growth factor a.
     
 0.620
RHBDF2
Rhomboid 5 homolog 2.
    
 0.607
ENSACLP00000011062
Rhomboid 5 homolog 1a (Drosophila).
    
 0.607
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.