LOC113011262 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113011262

GATA zinc finger domain containing 2A. (736 aa)

Predicted Functional Partners:

LOC113027513

0.857

LOC113011815

0.857

LOC113014472

0.857

ENSACLP00000004606

0.835

ENSACLP00000013570

0.835

ENSACLP00000023458

0.835

ENSACLP00000036203

0.835

aire

0.835

LOC113026104

0.833

LOC113016908

0.833

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000004606	ENSACLP00000023458	ENSACLP00000004606	ENSACLP00000023458	Chromodomain helicase DNA binding protein 5.	Chromodomain helicase DNA binding protein 4a.	0.400
ENSACLP00000004606	ENSACLP00000036203	ENSACLP00000004606	ENSACLP00000036203	Chromodomain helicase DNA binding protein 5.	Uncharacterized protein.	0.400
ENSACLP00000004606	LOC113011262	ENSACLP00000004606	ENSACLP00000003021	Chromodomain helicase DNA binding protein 5.	GATA zinc finger domain containing 2A.	0.835
ENSACLP00000004606	LOC113011815	ENSACLP00000004606	ENSACLP00000006069	Chromodomain helicase DNA binding protein 5.	Retinoblastoma binding protein 4.	0.866
ENSACLP00000004606	LOC113014472	ENSACLP00000004606	ENSACLP00000006543	Chromodomain helicase DNA binding protein 5.	WD_REPEATS_REGION domain-containing protein.	0.866
ENSACLP00000004606	LOC113016908	ENSACLP00000004606	ENSACLP00000034531	Chromodomain helicase DNA binding protein 5.	Methyl-CpG binding domain protein 3a.	0.835
ENSACLP00000004606	LOC113026104	ENSACLP00000004606	ENSACLP00000006712	Chromodomain helicase DNA binding protein 5.	Methyl-CpG binding domain protein 2.	0.835
ENSACLP00000004606	LOC113027513	ENSACLP00000004606	ENSACLP00000000117	Chromodomain helicase DNA binding protein 5.	Retinoblastoma binding protein 4, like.	0.866
ENSACLP00000013570	ENSACLP00000023458	ENSACLP00000013570	ENSACLP00000023458	Chromodomain helicase DNA binding protein 3.	Chromodomain helicase DNA binding protein 4a.	0.401
ENSACLP00000013570	ENSACLP00000036203	ENSACLP00000013570	ENSACLP00000036203	Chromodomain helicase DNA binding protein 3.	Uncharacterized protein.	0.400
ENSACLP00000013570	LOC113011262	ENSACLP00000013570	ENSACLP00000003021	Chromodomain helicase DNA binding protein 3.	GATA zinc finger domain containing 2A.	0.835
ENSACLP00000013570	LOC113011815	ENSACLP00000013570	ENSACLP00000006069	Chromodomain helicase DNA binding protein 3.	Retinoblastoma binding protein 4.	0.866
ENSACLP00000013570	LOC113014472	ENSACLP00000013570	ENSACLP00000006543	Chromodomain helicase DNA binding protein 3.	WD_REPEATS_REGION domain-containing protein.	0.866
ENSACLP00000013570	LOC113016908	ENSACLP00000013570	ENSACLP00000034531	Chromodomain helicase DNA binding protein 3.	Methyl-CpG binding domain protein 3a.	0.835
ENSACLP00000013570	LOC113026104	ENSACLP00000013570	ENSACLP00000006712	Chromodomain helicase DNA binding protein 3.	Methyl-CpG binding domain protein 2.	0.835
ENSACLP00000013570	LOC113027513	ENSACLP00000013570	ENSACLP00000000117	Chromodomain helicase DNA binding protein 3.	Retinoblastoma binding protein 4, like.	0.866
ENSACLP00000023458	ENSACLP00000004606	ENSACLP00000023458	ENSACLP00000004606	Chromodomain helicase DNA binding protein 4a.	Chromodomain helicase DNA binding protein 5.	0.400
ENSACLP00000023458	ENSACLP00000013570	ENSACLP00000023458	ENSACLP00000013570	Chromodomain helicase DNA binding protein 4a.	Chromodomain helicase DNA binding protein 3.	0.401
ENSACLP00000023458	LOC113011262	ENSACLP00000023458	ENSACLP00000003021	Chromodomain helicase DNA binding protein 4a.	GATA zinc finger domain containing 2A.	0.835
ENSACLP00000023458	LOC113011815	ENSACLP00000023458	ENSACLP00000006069	Chromodomain helicase DNA binding protein 4a.	Retinoblastoma binding protein 4.	0.866