STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027982DDE_Tnp_1_7 domain-containing protein. (734 aa)    
Predicted Functional Partners:
cd3e
Ig_4 domain-containing protein.
   
 0.960
cd247
Uncharacterized protein.
   
 0.912
LOC113021728
Ig-like domain-containing protein.
   
 0.779
LOC113031405
Cytochrome b5 reductase 4.
  
 0.763
ENSACLP00000016464
Tyrosine-protein kinase.
  
 0.725
oxsm
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.725
syk
Tyrosine-protein kinase.
  
 0.725
fdx2
Ferredoxin 2.
  
 0.715
FDX1
Ferredoxin 1.
  
 0.715
LOC113029756
Si:dkey-61p9.11.
   
 0.656
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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