Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113019990Si:dkey-208k4.2. (373 aa)    
Predicted Functional Partners:
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.812
LOC113025474
Uncharacterized protein.
    
 0.751
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 
 0.741
LOC113012693
BRF1 RNA polymerase III transcription initiation factor subunit.
    
 0.699
LOC113037338
BRF1 RNA polymerase III transcription initiation factor subunit b.
    
 0.699
POC1A
POC1 centriolar protein A.
    
 0.691
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.688
gtf3c5
General transcription factor IIIC, polypeptide 5.
    
 0.673
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
 0.658
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.641
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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