Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cirbpCold inducible RNA binding protein b. (180 aa)    
Predicted Functional Partners:
LOC113025582
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.977
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.977
ENSACLP00000030503
Heterogeneous nuclear ribonucleoprotein M.
   
 0.946
ENSACLP00000023120
Serine and arginine rich splicing factor 9.
   
 0.920
ENSACLP00000001445
RRM domain-containing protein.
   
 0.901
ENSACLP00000008415
RRM domain-containing protein.
   
 0.901
LOC113018261
RRM domain-containing protein.
   
 0.901
ENSACLP00000013161
Uncharacterized protein.
  
0.884
rbmx
RNA binding motif protein X-linked.
   
 
 0.882
tnpo3
Transportin 3.
    
 0.870
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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