col8a2 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

col8a2

Collagen, type VIII, alpha 2. (688 aa)

Predicted Functional Partners:

nt5dc1

0.691

ENSACLP00000041505

0.651

ENSACLP00000026996

0.647

LOC113022754

0.636

ENSACLP00000021979

0.614

LOC113008765

0.603

slc4a11

0.603

LOC113007686

0.596

LOC113010710

0.595

LOC113018400

0.591

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000021979	ENSACLP00000041505	ENSACLP00000021979	ENSACLP00000041505	ATP/GTP binding protein-like 1.	Lipoxygenase homology domains 1a.	0.615
ENSACLP00000021979	LOC113008765	ENSACLP00000021979	ENSACLP00000004109	ATP/GTP binding protein-like 1.	HCO3_cotransp domain-containing protein.	0.603
ENSACLP00000021979	col8a2	ENSACLP00000021979	ENSACLP00000003072	ATP/GTP binding protein-like 1.	Collagen, type VIII, alpha 2.	0.614
ENSACLP00000021979	slc4a11	ENSACLP00000021979	ENSACLP00000018277	ATP/GTP binding protein-like 1.	Solute carrier family 4 member 11.	0.603
ENSACLP00000026996	LOC113007686	ENSACLP00000026996	ENSACLP00000023860	VWFA domain-containing protein.	Uncharacterized protein.	0.992
ENSACLP00000026996	LOC113010710	ENSACLP00000026996	ENSACLP00000026905	VWFA domain-containing protein.	Collagen, type VI, alpha 2.	0.992
ENSACLP00000026996	LOC113018400	ENSACLP00000026996	ENSACLP00000024279	VWFA domain-containing protein.	C1q domain-containing protein.	0.652
ENSACLP00000026996	LOC113022754	ENSACLP00000026996	ENSACLP00000016423	VWFA domain-containing protein.	Tankyrase_bdg_C domain-containing protein.	0.636
ENSACLP00000026996	col8a2	ENSACLP00000026996	ENSACLP00000003072	VWFA domain-containing protein.	Collagen, type VIII, alpha 2.	0.647
ENSACLP00000041505	ENSACLP00000021979	ENSACLP00000041505	ENSACLP00000021979	Lipoxygenase homology domains 1a.	ATP/GTP binding protein-like 1.	0.615
ENSACLP00000041505	LOC113008765	ENSACLP00000041505	ENSACLP00000004109	Lipoxygenase homology domains 1a.	HCO3_cotransp domain-containing protein.	0.603
ENSACLP00000041505	LOC113022754	ENSACLP00000041505	ENSACLP00000016423	Lipoxygenase homology domains 1a.	Tankyrase_bdg_C domain-containing protein.	0.577
ENSACLP00000041505	col8a2	ENSACLP00000041505	ENSACLP00000003072	Lipoxygenase homology domains 1a.	Collagen, type VIII, alpha 2.	0.651
ENSACLP00000041505	slc4a11	ENSACLP00000041505	ENSACLP00000018277	Lipoxygenase homology domains 1a.	Solute carrier family 4 member 11.	0.603
LOC113007686	ENSACLP00000026996	ENSACLP00000023860	ENSACLP00000026996	Uncharacterized protein.	VWFA domain-containing protein.	0.992
LOC113007686	LOC113018400	ENSACLP00000023860	ENSACLP00000024279	Uncharacterized protein.	C1q domain-containing protein.	0.642
LOC113007686	LOC113022754	ENSACLP00000023860	ENSACLP00000016423	Uncharacterized protein.	Tankyrase_bdg_C domain-containing protein.	0.636
LOC113007686	col8a2	ENSACLP00000023860	ENSACLP00000003072	Uncharacterized protein.	Collagen, type VIII, alpha 2.	0.596
LOC113008765	ENSACLP00000021979	ENSACLP00000004109	ENSACLP00000021979	HCO3_cotransp domain-containing protein.	ATP/GTP binding protein-like 1.	0.603
LOC113008765	ENSACLP00000041505	ENSACLP00000004109	ENSACLP00000041505	HCO3_cotransp domain-containing protein.	Lipoxygenase homology domains 1a.	0.603