STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003085Solute carrier family 30 member 6. (508 aa)    
Predicted Functional Partners:
slc30a5
Solute carrier family 30 member 5.
   
 
 0.983
LOC113037520
Solute carrier family 30 member 2.
    
 
 0.858
slc30a9
Solute carrier family 30 member 9.
   
 
 0.780
slc39a13
Solute carrier family 39 member 13.
   
 0.780
ENSACLP00000025245
Uncharacterized protein.
  
 0.779
SLC39A11
Solute carrier family 39 member 11.
   
 0.767
LOC113011700
Solute carrier family 39 member 8.
  
 0.757
slc30a4
Solute carrier family 30 member 4.
    
 
 0.747
LOC113035360
Phosphoribosyl pyrophosphate synthetase 1B.
    
  0.746
ENSACLP00000029372
Coenzyme Q2 4-hydroxybenzoate polyprenyltransferase.
     
 0.735
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.