Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spty2d1SPT2 chromatin protein domain containing 1. (713 aa)    
Predicted Functional Partners:
ENSACLP00000003123
UEV and lactate/malate dehyrogenase domains.
  
 
 0.915
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
    
 
 0.857
LOC113007828
Nucleolar protein interacting with the FHA domain of MKI67.
    
   0.790
uso1
USO1 vesicle transport factor.
   
 0.789
LOC113008847
Uncharacterized protein.
   
 0.782
LOC113026240
WASP like actin nucleation promoting factor a.
   
 0.782
LOC113019345
Ubiquitin-like domain-containing protein.
    
 0.749
LOC113020323
Elongin B.
    
 0.749
JMY
Junction mediating and regulatory protein, p53 cofactor.
   
 0.735
LOC113020192
Serine/arginine repetitive matrix 2.
    
 
 0.732
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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