STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113014482Protein tyrosine phosphatase 4A2b. (171 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
  0.954
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
   0.839
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.772
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.772
ENSACLP00000027393
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.658
ENSACLP00000027434
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.658
cnnm3
Uncharacterized protein.
    
 
 0.658
ENSACLP00000034429
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.658
LOC113033000
Uncharacterized protein.
    
 
 0.658
flrt2
Fibronectin leucine rich transmembrane protein 2.
      
 0.654
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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