STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113014482Protein tyrosine phosphatase 4A2b. (171 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.759
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
   0.592
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.576
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.576
ENSACLP00000027393
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.576
ENSACLP00000027434
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.576
cnnm3
Uncharacterized protein.
    
 
 0.576
ENSACLP00000034429
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.576
LOC113033000
Uncharacterized protein.
    
 
 0.576
LOC113032461
Zgc:86598; Belongs to the protein kinase superfamily.
     
 0.501
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.