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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex16Peroxisomal membrane protein PEX16. (376 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
    
 0.978
pex3
Peroxisomal biogenesis factor 3.
    
 0.896
pex14
Peroxisomal biogenesis factor 14.
    
 0.866
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.849
ENSACLP00000039721
Family with sequence similarity 185 member A.
    
 0.837
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
     
 0.834
pex2
Peroxisomal biogenesis factor 2.
     
 0.827
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 
 0.823
pex11a
Peroxisomal biogenesis factor 11 alpha.
   
 
 0.823
ENSACLP00000019301
Uncharacterized protein.
     
 0.814
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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