Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113029160Charged multivesicular body protein 5b. (219 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 0.996
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.992
chmp3
Charged multivesicular body protein 3.
   
 0.992
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.991
chmp1a
Charged multivesicular body protein 1A.
   
 0.974
chmp1b
Chromatin modifying protein 1B.
   
 0.974
LOC113033874
Uncharacterized protein.
   
 0.974
LOC113029912
Charged multivesicular body protein 4C.
   
 0.973
LOC113022184
Uncharacterized protein.
   
 0.973
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.973
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.