STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113029160Charged multivesicular body protein 5b. (219 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 0.989
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.985
chmp3
Charged multivesicular body protein 3.
   
 0.978
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
   
 0.970
chmp1a
Charged multivesicular body protein 1A.
   
 0.952
LOC113029912
Charged multivesicular body protein 4C.
  
0.951
chmp1b
Chromatin modifying protein 1B.
   
 0.951
LOC113033874
Uncharacterized protein.
   
 0.951
LOC113022184
Uncharacterized protein.
  
0.950
chmp4b
Charged multivesicular body protein 4Bb.
  
0.949
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.