STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013282Serine/threonine kinase 35; Belongs to the protein kinase superfamily. (430 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.929
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.926
ENSACLP00000021185
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 0.926
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.917
rb1cc1
RB1-inducible coiled-coil 1.
    
 0.915
ENSACLP00000016841
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.888
LOC113010123
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.888
atg101
Autophagy related 101.
    
 0.888
ATG2A
Autophagy related 2A.
   
 0.879
ATG2B
Autophagy related 2B.
   
 0.879
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.