LOC113027050 protein (Astatotilapia calliptera)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC113027050

Si:dkeyp-19e1.3. (818 aa)

Predicted Functional Partners:

LOC113009794

0.890

RAB19

0.890

LOC113036155

0.543

rabgef1

0.543

cgnl1

0.538

LOC113023477

0.538

LOC113030085

0.538

ENSACLP00000009819

0.538

ENSACLP00000009823

0.538

LOC113034865

0.538

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000009819	ENSACLP00000009823	ENSACLP00000009819	ENSACLP00000009823	RAB, member RAS oncogene family-like 6b.	Uncharacterized protein.	0.826
ENSACLP00000009819	LOC113027050	ENSACLP00000009819	ENSACLP00000003204	RAB, member RAS oncogene family-like 6b.	Si:dkeyp-19e1.3.	0.538
ENSACLP00000009823	ENSACLP00000009819	ENSACLP00000009823	ENSACLP00000009819	Uncharacterized protein.	RAB, member RAS oncogene family-like 6b.	0.826
ENSACLP00000009823	LOC113027050	ENSACLP00000009823	ENSACLP00000003204	Uncharacterized protein.	Si:dkeyp-19e1.3.	0.538
LOC113009794	LOC113023477	ENSACLP00000001219	ENSACLP00000004967	Uncharacterized protein.	Uncharacterized protein.	0.403
LOC113009794	LOC113027050	ENSACLP00000001219	ENSACLP00000003204	Uncharacterized protein.	Si:dkeyp-19e1.3.	0.890
LOC113009794	LOC113030085	ENSACLP00000001219	ENSACLP00000008401	Uncharacterized protein.	RAB33B, member RAS oncogene family a.	0.600
LOC113009794	LOC113034865	ENSACLP00000001219	ENSACLP00000011142	Uncharacterized protein.	Uncharacterized protein.	0.403
LOC113023477	LOC113009794	ENSACLP00000004967	ENSACLP00000001219	Uncharacterized protein.	Uncharacterized protein.	0.403
LOC113023477	LOC113027050	ENSACLP00000004967	ENSACLP00000003204	Uncharacterized protein.	Si:dkeyp-19e1.3.	0.538
LOC113023477	LOC113030085	ENSACLP00000004967	ENSACLP00000008401	Uncharacterized protein.	RAB33B, member RAS oncogene family a.	0.424
LOC113023477	RAB19	ENSACLP00000004967	ENSACLP00000005731	Uncharacterized protein.	RAB19, member RAS oncogene family.	0.403
LOC113027050	ENSACLP00000009819	ENSACLP00000003204	ENSACLP00000009819	Si:dkeyp-19e1.3.	RAB, member RAS oncogene family-like 6b.	0.538
LOC113027050	ENSACLP00000009823	ENSACLP00000003204	ENSACLP00000009823	Si:dkeyp-19e1.3.	Uncharacterized protein.	0.538
LOC113027050	LOC113009794	ENSACLP00000003204	ENSACLP00000001219	Si:dkeyp-19e1.3.	Uncharacterized protein.	0.890
LOC113027050	LOC113023477	ENSACLP00000003204	ENSACLP00000004967	Si:dkeyp-19e1.3.	Uncharacterized protein.	0.538
LOC113027050	LOC113030085	ENSACLP00000003204	ENSACLP00000008401	Si:dkeyp-19e1.3.	RAB33B, member RAS oncogene family a.	0.538
LOC113027050	LOC113034865	ENSACLP00000003204	ENSACLP00000011142	Si:dkeyp-19e1.3.	Uncharacterized protein.	0.538
LOC113027050	LOC113036155	ENSACLP00000003204	ENSACLP00000023101	Si:dkeyp-19e1.3.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.543
LOC113027050	RAB19	ENSACLP00000003204	ENSACLP00000005731	Si:dkeyp-19e1.3.	RAB19, member RAS oncogene family.	0.890