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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUGP1SURP and G-patch domain containing 1. (638 aa)    
Predicted Functional Partners:
ENSACLP00000005838
RNA binding motif protein 17.
   
 
 0.966
LOC113018639
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.951
DHX15
DEAH-box helicase 15.
   
 0.951
LOC113020252
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.921
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.921
LOC113012926
RNA binding motif protein 10.
   
 0.859
LOC113022277
RNA binding motif protein 5.
   
0.859
LOC113022287
RNA binding motif protein 6.
   
 0.859
RBM5
RNA binding motif protein 5.
   
0.859
ENSACLP00000011218
Splicing factor 1.
   
 0.788
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.