Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdhr2Uncharacterized protein. (1278 aa)    
Predicted Functional Partners:
ENSACLP00000005618
Usher syndrome 1C.
   
 
 0.960
LOC113009135
Uncharacterized protein.
   
 0.919
ENSACLP00000018516
Protocadherin-related 15b.
   
 0.919
LOC113027407
Uncharacterized protein.
   
 0.919
ENSACLP00000022278
Protocadherin-related 15a.
   
 0.919
ENSACLP00000022304
Si:dkeyp-86d6.2.
   
 0.919
ENSACLP00000001125
Four-jointed box kinase 1.
   
 0.744
LOC113021483
Uncharacterized protein.
    
 0.707
LOC113023765
Junction plakoglobin a.
    
 0.707
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.707
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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