STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c20h1orf194Uncharacterized protein. (130 aa)    
Predicted Functional Partners:
cfap52
Cilia and flagella associated protein 52.
   
 
 0.969
ENSACLP00000008758
Cilia and flagella associated protein 126.
   
   0.963
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
    
 
 0.962
ribc1
RIB43A domain with coiled-coils 1.
   
 
 0.955
zmynd12
Zinc finger, MYND-type containing 12.
   
 
 0.928
ENSACLP00000013243
RIB43A domain with coiled-coils 2.
   
 
 0.926
ENSACLP00000016059
Coiled-coil domain containing 173.
   
   0.918
LOC113026032
Sperm associated antigen 8.
   
   0.917
mns1
Meiosis-specific nuclear structural 1.
   
 
 0.916
efhb
EF-hand domain family, member B.
   
   0.910
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.