STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113012817Si:dkey-6n6.2. (300 aa)    
Predicted Functional Partners:
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
 0.878
dcp1a
Decapping mRNA 1A.
    
 0.858
LOC113009769
Decapping mRNA 1B.
    
 0.858
LOC113035320
Multiple inositol-polyphosphate phosphatase 1a; Belongs to the histidine acid phosphatase family.
    
 0.857
ENSACLP00000022773
Multiple inositol-polyphosphate phosphatase 1a; Belongs to the histidine acid phosphatase family.
    
 0.857
LOC113027916
Uncharacterized protein; Belongs to the histidine acid phosphatase family.
    
 0.857
acp1
LMWPc domain-containing protein.
    
 0.854
ENSACLP00000031594
Enhancer of mRNA decapping 4.
    
 0.853
ENSACLP00000024569
Transient receptor potential cation channel, subfamily M, member 2.
    
 0.845
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.837
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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