nefh protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nefh

IF rod domain-containing protein; Belongs to the intermediate filament family. (784 aa)

Predicted Functional Partners:

prph

0.829

asph

0.804

ENSACLP00000033826

0.802

LOC113019283

0.800

LOC113019140

0.712

LOC113007801

0.712

LOC113011130

0.712

LOC113016617

0.712

sod1

0.709

sod3

0.709

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000033826	LOC113007801	ENSACLP00000033826	ENSACLP00000007957	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.952
ENSACLP00000033826	LOC113011130	ENSACLP00000033826	ENSACLP00000028910	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.935
ENSACLP00000033826	LOC113016617	ENSACLP00000033826	ENSACLP00000039777	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.952
ENSACLP00000033826	LOC113019140	ENSACLP00000033826	ENSACLP00000000116	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.935
ENSACLP00000033826	asph	ENSACLP00000033826	ENSACLP00000028052	Asp-B-Hydro_N domain-containing protein.	Un-named hu7910.	0.872
ENSACLP00000033826	nefh	ENSACLP00000033826	ENSACLP00000003394	Asp-B-Hydro_N domain-containing protein.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.802
LOC113007801	ENSACLP00000033826	ENSACLP00000007957	ENSACLP00000033826	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.952
LOC113007801	LOC113011130	ENSACLP00000007957	ENSACLP00000028910	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872
LOC113007801	LOC113016617	ENSACLP00000007957	ENSACLP00000039777	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872
LOC113007801	LOC113019140	ENSACLP00000007957	ENSACLP00000000116	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872
LOC113007801	asph	ENSACLP00000007957	ENSACLP00000028052	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Un-named hu7910.	0.931
LOC113007801	nefh	ENSACLP00000007957	ENSACLP00000003394	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.712
LOC113011130	ENSACLP00000033826	ENSACLP00000028910	ENSACLP00000033826	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.935
LOC113011130	LOC113007801	ENSACLP00000028910	ENSACLP00000007957	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872
LOC113011130	LOC113016617	ENSACLP00000028910	ENSACLP00000039777	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872
LOC113011130	LOC113019140	ENSACLP00000028910	ENSACLP00000000116	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872
LOC113011130	asph	ENSACLP00000028910	ENSACLP00000028052	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Un-named hu7910.	0.931
LOC113011130	nefh	ENSACLP00000028910	ENSACLP00000003394	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.712
LOC113016617	ENSACLP00000033826	ENSACLP00000039777	ENSACLP00000033826	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.952
LOC113016617	LOC113007801	ENSACLP00000039777	ENSACLP00000007957	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.872