Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036783Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.634
eif2b3
Eukaryotic translation initiation factor 2B, subunit 3 gamma.
      
 0.632
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
      
 0.629
LOC113036782
Lebercilin domain-containing protein.
      
 0.619
mtmr9
Myotubularin related protein 9.
      
 0.608
ENSACLP00000029064
Zgc:154055.
      
 0.608
xkr6
XK-related protein.
      
 0.551
acadsb
Acyl-CoA dehydrogenase short/branched chain.
      
 0.528
acads
Acyl-CoA dehydrogenase short chain.
      
 0.528
ENSACLP00000035407
High mobility group nucleosome binding domain 6.
      
 0.499
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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