LOC113036783 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113036783

Uncharacterized protein. (238 aa)

Predicted Functional Partners:

psmg1

0.507

LOC113036782

0.493

mre11

0.469

GHITM

0.452

mtmr9

0.433

ENSACLP00000029064

0.433

ENSACLP00000006733

0.416

LOC113029277

0.416

ENSACLP00000027282

0.416

eif2b3

0.400

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000006733	LOC113036783	ENSACLP00000006733	ENSACLP00000003397	Selenoprotein O1.	Uncharacterized protein.	0.416
ENSACLP00000027282	LOC113036783	ENSACLP00000027282	ENSACLP00000003397	Uncharacterized protein.	Uncharacterized protein.	0.416
ENSACLP00000029064	LOC113036783	ENSACLP00000029064	ENSACLP00000003397	Zgc:154055.	Uncharacterized protein.	0.433
GHITM	LOC113036783	ENSACLP00000006713	ENSACLP00000003397	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	Uncharacterized protein.	0.452
GHITM	eif2b3	ENSACLP00000006713	ENSACLP00000039853	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.422
GHITM	mre11	ENSACLP00000006713	ENSACLP00000027130	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.534
LOC113029277	LOC113036783	ENSACLP00000012194	ENSACLP00000003397	Uncharacterized protein.	Uncharacterized protein.	0.416
LOC113036782	LOC113036783	ENSACLP00000003360	ENSACLP00000003397	Lebercilin domain-containing protein.	Uncharacterized protein.	0.493
LOC113036783	ENSACLP00000006733	ENSACLP00000003397	ENSACLP00000006733	Uncharacterized protein.	Selenoprotein O1.	0.416
LOC113036783	ENSACLP00000027282	ENSACLP00000003397	ENSACLP00000027282	Uncharacterized protein.	Uncharacterized protein.	0.416
LOC113036783	ENSACLP00000029064	ENSACLP00000003397	ENSACLP00000029064	Uncharacterized protein.	Zgc:154055.	0.433
LOC113036783	GHITM	ENSACLP00000003397	ENSACLP00000006713	Uncharacterized protein.	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	0.452
LOC113036783	LOC113029277	ENSACLP00000003397	ENSACLP00000012194	Uncharacterized protein.	Uncharacterized protein.	0.416
LOC113036783	LOC113036782	ENSACLP00000003397	ENSACLP00000003360	Uncharacterized protein.	Lebercilin domain-containing protein.	0.493
LOC113036783	eif2b3	ENSACLP00000003397	ENSACLP00000039853	Uncharacterized protein.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.400
LOC113036783	mre11	ENSACLP00000003397	ENSACLP00000027130	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.469
LOC113036783	mtmr9	ENSACLP00000003397	ENSACLP00000017168	Uncharacterized protein.	Myotubularin related protein 9.	0.433
LOC113036783	psmg1	ENSACLP00000003397	ENSACLP00000024557	Uncharacterized protein.	Uncharacterized protein.	0.507
eif2b3	GHITM	ENSACLP00000039853	ENSACLP00000006713	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	0.422
eif2b3	LOC113036783	ENSACLP00000039853	ENSACLP00000003397	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	Uncharacterized protein.	0.400