STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003449Catenin (cadherin-associated protein), alpha 1. (923 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.973
vcl
Vinculin b.
    
0.966
ENSACLP00000009083
Vinculin a.
    
0.963
LOC113014539
Uncharacterized protein.
   
 0.962
LOC113021483
Uncharacterized protein.
   
 0.936
LOC113023765
Junction plakoglobin a.
   
 0.936
ENSACLP00000003584
Uncharacterized protein.
    
 0.895
ACTN4
Actinin alpha 4.
   
 0.894
actn1
Actinin, alpha 1.
   
 0.894
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
 0.885
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.