Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113028031Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
B3GALT1
Hexosyltransferase.
     
 0.915
LOC113016462
Hexosyltransferase.
     
 0.915
neu4
Sialidase 4.
    
  0.882
neu3
Sialidase 3 (membrane sialidase), tandem duplicate 1.
    
  0.882
ENSACLP00000038433
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5.
     
 0.880
gla
Alpha-galactosidase.
     
 0.879
hexb
Beta-hexosaminidase.
     
 0.879
hexa
Beta-hexosaminidase.
     
 0.878
LOC113008990
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6.
     
 0.877
gal3st1
Galactose-3-O-sulfotransferase 1a.
     
 0.873
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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