STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113020923Transducer of ERBB2, 1a. (339 aa)    
Predicted Functional Partners:
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.905
ENSACLP00000022178
CCR4-NOT transcription complex, subunit 11.
    
 0.903
ENSACLP00000021173
CCR4-NOT transcription complex, subunit 1.
    
 0.900
LOC113027080
CCR4-NOT transcription complex, subunit 2.
    
 0.885
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.885
cnot7
CCR4-NOT transcription complex, subunit 7.
    
 0.877
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.877
btg1
B-cell translocation gene 1, anti-proliferative.
     
  0.847
LOC113015167
CCR4-NOT transcription complex, subunit 3b.
    
 0.836
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
 0.836
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.