Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crim1Uncharacterized protein. (934 aa)    
Predicted Functional Partners:
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
    
 0.840
ENSACLP00000002194
LRRCT domain-containing protein.
    
 0.836
frem1
Fras1 related extracellular matrix 1a.
    
 0.812
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.776
gp1bb
Glycoprotein Ib platelet subunit beta.
    
 0.771
ENSACLP00000030575
Fras1 related extracellular matrix 1b.
    
 0.749
ENSACLP00000012590
Nucleoporin 214.
    
 0.721
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.710
ENSACLP00000024108
Si:dkey-43k4.5; Belongs to the potassium channel family.
   
 
 0.709
lxn
Latexin.
      
 0.708
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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