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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003469Si:ch1073-174d20.2; Belongs to the AAA ATPase family. (666 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 0.942
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
 
 
 0.879
LOC113009519
Prohibitin.
  
 0.875
PHB2
Prohibitin.
  
 0.875
mrpl2
Mitochondrial ribosomal protein L2.
  
 
 0.872
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
   0.867
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
    
   0.865
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
 
 
 0.864
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.863
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.861
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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