Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PCP4Purkinje cell protein 4. (79 aa)    
Predicted Functional Partners:
nudt3
Nudix (nucleoside diphosphate linked moiety X)-type motif 3b.
    
   0.889
LOC113014850
SH3 domain binding glutamate-rich protein like 3.
    
 
 0.749
LOC113006627
Glutaredoxin domain-containing protein.
    
 
 0.749
ENSACLP00000029493
Urotensin 2 domain containing.
      
 0.653
garnl3
GTPase activating Rap/RanGAP domain like 3.
      
 0.638
snrpb2
Small nuclear ribonucleoprotein polypeptide B2.
    
   0.625
snrpa
Small nuclear ribonucleoprotein polypeptide A.
    
   0.625
rbpms2
RNA binding protein, mRNA processing factor 2b.
      
 0.611
CALML6
Calmodulin like 6.
    
 
 0.572
scn4b
Sodium channel, voltage-gated, type IV, beta a.
      
 0.527
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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