Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim9Tripartite motif containing 9. (715 aa)    
Predicted Functional Partners:
LOC113036715
F-box and WD repeat domain containing 11b.
    
 0.924
ENSACLP00000006413
DCC netrin 1 receptor.
   
 
 0.908
ENSACLP00000019899
Neogenin 1b.
   
 
 0.908
LOC113025216
Immunoglobulin superfamily, DCC subclass, member 4.
   
 
 0.906
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.824
LOC113026071
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.824
exoc1
Exocyst complex component 1.
    
   0.807
TRIM67
Tripartite motif containing 67.
    
   0.791
fbxw2
F-box and WD repeat domain containing 2.
    
  0.768
TCERG1
Transcription elongation regulator 1.
   
   0.731
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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