STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003482Makorin, ring finger protein, 4. (364 aa)    
Predicted Functional Partners:
LOC113024099
FIP1 like 1b (S. cerevisiae).
   
 
  0.769
cpsf4
Cleavage and polyadenylation specific factor 4.
     
  0.768
cpsf1
Cleavage and polyadenylation specific factor 1.
     
  0.768
WDR33
WD repeat domain 33.
     
  0.768
tert
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 
 0.753
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
     
 0.719
trip12
Thyroid hormone receptor interactor 12.
     
 0.668
RPS27A
Ribosomal protein S27a.
    
  0.656
ENSACLP00000021431
Cleavage and polyadenylation specific factor 3.
     
  0.650
CPSF3
Cleavage and polyadenylation specific factor 3.
     
  0.650
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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