STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vcpValosin containing protein; Belongs to the AAA ATPase family. (806 aa)    
Predicted Functional Partners:
ubxn6
UBX domain protein 6.
    
 0.993
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 0.993
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.993
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.991
ubxn2a
UBX domain protein 2A.
   
 0.991
ubxn1
UBX domain protein 1.
    
 0.990
faf2
Fas associated factor family member 2.
    
 0.986
ENSACLP00000031811
UBX domain protein 4.
   
 0.986
ENSACLP00000031828
Uncharacterized protein.
   
 0.986
FAAP100
FA core complex associated protein 100.
   
 0.984
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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