STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c15h19orf25Si:ch73-238c9.1. (107 aa)    
Predicted Functional Partners:
rint1
RAD50 interactor 1.
    
 
 0.759
scfd2
Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family.
    
   0.608
cbr4
Carbonyl reductase 4.
    
 
 0.512
zw10
Zw10 kinetochore protein.
    
 
 0.508
ENSACLP00000028288
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
   0.450
LOC113016568
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
   0.450
ENSACLP00000030278
BAI1 associated protein 2.
    
   0.438
LOC113020650
BAI1-associated protein 2a.
    
   0.438
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.