Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSACLP00000003506Ig-like domain-containing protein. (152 aa)    
Predicted Functional Partners:
scn4b
Sodium channel, voltage-gated, type IV, beta a.
     
  0.620
LOC113031102
Sodium channel, voltage-gated, type IV, beta b.
     
  0.620
LOC113032689
Si:ch211-225p5.8.
     
  0.620
LOC113028221
Protein kinase domain-containing protein.
    
  0.499
LOC113035251
Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 2.
    
  0.499
scn1b
Ig-like domain-containing protein.
     
  0.479
LOC113032865
Sodium channel, voltage-gated, type I, beta a.
     
  0.479
ENSACLP00000024615
Ig-like domain-containing protein.
     
  0.479
LOC113025841
Uncharacterized protein.
     
  0.479
LOC113010089
Vav 3 guanine nucleotide exchange factor b.
    
 0.418
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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