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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELOF1Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)    
Predicted Functional Partners:
ENSACLP00000016700
Transcription elongation factor SPT5.
    
 
 0.928
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.906
ENSACLP00000017394
TFIIS N-terminal domain-containing protein.
    
 
 0.893
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 
 0.890
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
   
 
 0.882
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
   
   0.877
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
   
   0.876
POLR2E
RNA polymerase II subunit E.
  
   0.869
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
   0.868
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
   0.868
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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