Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arhgef11Rho guanine nucleotide exchange factor (GEF) 11. (1449 aa)    
Predicted Functional Partners:
gna12
G protein subunit alpha 12.
    
 0.956
LOC113021491
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.956
ENSACLP00000015907
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.956
LOC113028194
Uncharacterized protein.
    
 0.956
ENSACLP00000012848
Uncharacterized protein.
   
 0.948
LOC113012818
Uncharacterized protein.
   
 0.927
LOC113012962
Uncharacterized protein.
   
 0.927
LOC113013171
Uncharacterized protein.
   
 0.927
LOC113022452
Ras homolog gene family, member Ab.
   
 0.927
LOC113022007
Ras homolog family member Cb.
   
 0.927
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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