ENSACLP00000003526 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000003526

Ras association and DIL domains. (1132 aa)

Predicted Functional Partners:

ENSACLP00000036302

0.717

exoc4

0.699

LOC113034294

0.624

LOC113016185

0.624

LOC113016583

0.624

LOC113011118

0.624

rab25

0.624

LOC113031621

0.624

LOC113015258

0.624

ENSACLP00000027762

0.624

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003526	ENSACLP00000027762	ENSACLP00000003526	ENSACLP00000027762	Ras association and DIL domains.	Uncharacterized protein.	0.624
ENSACLP00000003526	ENSACLP00000036302	ENSACLP00000003526	ENSACLP00000036302	Ras association and DIL domains.	Leucine-rich repeats and guanylate kinase domain containing.	0.717
ENSACLP00000003526	LOC113011118	ENSACLP00000003526	ENSACLP00000010344	Ras association and DIL domains.	Uncharacterized protein.	0.624
ENSACLP00000003526	LOC113015258	ENSACLP00000003526	ENSACLP00000026857	Ras association and DIL domains.	RAB25, member RAS oncogene family a.	0.624
ENSACLP00000003526	LOC113016185	ENSACLP00000003526	ENSACLP00000007973	Ras association and DIL domains.	RAB11B, member RAS oncogene family, a.	0.624
ENSACLP00000003526	LOC113016583	ENSACLP00000003526	ENSACLP00000008012	Ras association and DIL domains.	Uncharacterized protein.	0.624
ENSACLP00000003526	LOC113031621	ENSACLP00000003526	ENSACLP00000015075	Ras association and DIL domains.	RAB11a, member RAS oncogene family, like.	0.624
ENSACLP00000003526	LOC113034294	ENSACLP00000003526	ENSACLP00000002600	Ras association and DIL domains.	RAB11a, member RAS oncogene family.	0.624
ENSACLP00000003526	exoc4	ENSACLP00000003526	ENSACLP00000036467	Ras association and DIL domains.	Exocyst complex component 4.	0.699
ENSACLP00000003526	rab25	ENSACLP00000003526	ENSACLP00000015068	Ras association and DIL domains.	RAB25, member RAS oncogene family b.	0.624
ENSACLP00000027762	ENSACLP00000003526	ENSACLP00000027762	ENSACLP00000003526	Uncharacterized protein.	Ras association and DIL domains.	0.624
ENSACLP00000027762	ENSACLP00000036302	ENSACLP00000027762	ENSACLP00000036302	Uncharacterized protein.	Leucine-rich repeats and guanylate kinase domain containing.	0.463
ENSACLP00000027762	exoc4	ENSACLP00000027762	ENSACLP00000036467	Uncharacterized protein.	Exocyst complex component 4.	0.778
ENSACLP00000036302	ENSACLP00000003526	ENSACLP00000036302	ENSACLP00000003526	Leucine-rich repeats and guanylate kinase domain containing.	Ras association and DIL domains.	0.717
ENSACLP00000036302	ENSACLP00000027762	ENSACLP00000036302	ENSACLP00000027762	Leucine-rich repeats and guanylate kinase domain containing.	Uncharacterized protein.	0.463
ENSACLP00000036302	LOC113011118	ENSACLP00000036302	ENSACLP00000010344	Leucine-rich repeats and guanylate kinase domain containing.	Uncharacterized protein.	0.463
ENSACLP00000036302	LOC113015258	ENSACLP00000036302	ENSACLP00000026857	Leucine-rich repeats and guanylate kinase domain containing.	RAB25, member RAS oncogene family a.	0.463
ENSACLP00000036302	LOC113016185	ENSACLP00000036302	ENSACLP00000007973	Leucine-rich repeats and guanylate kinase domain containing.	RAB11B, member RAS oncogene family, a.	0.463
ENSACLP00000036302	LOC113016583	ENSACLP00000036302	ENSACLP00000008012	Leucine-rich repeats and guanylate kinase domain containing.	Uncharacterized protein.	0.463
ENSACLP00000036302	LOC113031621	ENSACLP00000036302	ENSACLP00000015075	Leucine-rich repeats and guanylate kinase domain containing.	RAB11a, member RAS oncogene family, like.	0.463