Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppardPeroxisome proliferator-activated receptor delta b. (509 aa)    
Predicted Functional Partners:
ENSACLP00000039118
Retinoid X receptor, alpha a.
    
 0.965
LOC113016027
Uncharacterized protein.
    
 0.963
LOC113032455
Retinoid x receptor, beta b.
    
 0.957
RXRB
Retinoid X receptor beta.
    
 0.957
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 0.927
ENSACLP00000010348
Nuclear receptor corepressor 1.
    
 0.919
ncor2
Nuclear receptor corepressor 2.
    
 0.919
PPARG
Peroxisome proliferator activated receptor gamma.
    
 0.910
ENSACLP00000009920
Nuclear receptor subfamily 1, group D, member 4a.
    
 0.888
LOC113031463
Nuclear receptor subfamily 1, group D, member 2a.
    
 0.888
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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