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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113021297RAB3D, member RAS oncogene family, b. (225 aa)    
Predicted Functional Partners:
ENSACLP00000008539
Uncharacterized protein.
    
 0.966
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.966
LOC113022039
Uncharacterized protein.
   
 0.739
ENSACLP00000008934
Synaptotagmin Vb.
   
 0.739
syt1
Synaptotagmin Ia.
   
 0.739
LOC113026845
Synaptotagmin Ib.
   
 0.734
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.716
LOC113026071
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.716
LOC113029983
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.702
ENSACLP00000003376
Uncharacterized protein.
    
 0.702
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.