Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113021297RAB3D, member RAS oncogene family, b. (225 aa)    
Predicted Functional Partners:
ENSACLP00000008539
Uncharacterized protein.
    
 0.983
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.983
rabif
RAB interacting factor.
    
 
 0.781
rims3
Regulating synaptic membrane exocytosis 3.
    
 0.772
RIMS1
Regulating synaptic membrane exocytosis 1.
    
 0.772
ENSACLP00000020902
Regulating synaptic membrane exocytosis 1a.
    
 0.772
LOC113029983
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.747
ENSACLP00000003376
Uncharacterized protein.
    
 0.747
pclo
Piccolo presynaptic cytomatrix protein a.
     
 0.746
PCLO
Piccolo presynaptic cytomatrix protein b.
     
 0.746
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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