STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrLipolysis stimulated lipoprotein receptor. (905 aa)    
Predicted Functional Partners:
cog1
Component of oligomeric golgi complex 1.
      
 0.502
cog2
Component of oligomeric golgi complex 2.
      
 0.502
tubd1
Tubulin, delta 1; Belongs to the tubulin family.
      
 0.491
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
      
 0.490
LOC113025373
Occludin a.
   
  
 0.470
LOC113021483
Uncharacterized protein.
   
 
 0.463
LOC113023765
Junction plakoglobin a.
   
 
 0.463
pla2g4a
Phospholipase A2.
     
  0.444
LOC113011617
Apolipoprotein Ba.
     
 0.432
LOC113037288
Apolipoprotein Bb, tandem duplicate 2.
     
 0.432
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.