Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nol11Nucleolar protein 11. (720 aa)    
Predicted Functional Partners:
utp4
UTP4 small subunit processome component.
   
 0.997
wdr43
WD repeat domain 43.
   
 0.997
ENSACLP00000014943
UTP15 small subunit processome component.
   
 0.992
wdr75
WD repeat domain 75.
   
 0.984
ENSACLP00000011936
UTP20 small subunit processome component.
   
 
 0.979
ENSACLP00000025811
U3snoRNP10 domain-containing protein.
   
 0.966
ENSACLP00000025841
BP28CT domain-containing protein.
   
 0.966
nol7
Nucleolar protein 7.
    
 
 0.966
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
 
 0.955
ENSACLP00000026945
Programmed cell death 11.
   
 
 0.951
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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