tmem205 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tmem205

Transmembrane protein 205. (188 aa)

Predicted Functional Partners:

pwp1

0.725

tmem14a

0.705

proser1

0.661

ngrn

0.654

ENSACLP00000039748

0.650

insyn1

0.647

bphl

0.614

mettl11b

0.612

fkbp10

0.610

LOC113028428

0.610

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000039748	tmem205	ENSACLP00000039748	ENSACLP00000003565	GRAM domain containing 1c.	Transmembrane protein 205.	0.650
LOC113028428	tmem205	ENSACLP00000013419	ENSACLP00000003565	Peptidylprolyl isomerase.	Transmembrane protein 205.	0.610
bphl	tmem205	ENSACLP00000035353	ENSACLP00000003565	Biphenyl hydrolase like.	Transmembrane protein 205.	0.614
fkbp10	tmem205	ENSACLP00000003248	ENSACLP00000003565	Peptidylprolyl isomerase.	Transmembrane protein 205.	0.610
insyn1	mettl11b	ENSACLP00000022166	ENSACLP00000032096	Inhibitory synaptic factor 1.	Methyltransferase like 11B.	0.608
insyn1	ngrn	ENSACLP00000022166	ENSACLP00000002069	Inhibitory synaptic factor 1.	Neugrin, neurite outgrowth associated.	0.647
insyn1	proser1	ENSACLP00000022166	ENSACLP00000034194	Inhibitory synaptic factor 1.	Proline and serine rich 1.	0.650
insyn1	tmem205	ENSACLP00000022166	ENSACLP00000003565	Inhibitory synaptic factor 1.	Transmembrane protein 205.	0.647
mettl11b	insyn1	ENSACLP00000032096	ENSACLP00000022166	Methyltransferase like 11B.	Inhibitory synaptic factor 1.	0.608
mettl11b	ngrn	ENSACLP00000032096	ENSACLP00000002069	Methyltransferase like 11B.	Neugrin, neurite outgrowth associated.	0.612
mettl11b	proser1	ENSACLP00000032096	ENSACLP00000034194	Methyltransferase like 11B.	Proline and serine rich 1.	0.615
mettl11b	pwp1	ENSACLP00000032096	ENSACLP00000039869	Methyltransferase like 11B.	PWP1 homolog, endonuclein.	0.534
mettl11b	tmem205	ENSACLP00000032096	ENSACLP00000003565	Methyltransferase like 11B.	Transmembrane protein 205.	0.612
ngrn	insyn1	ENSACLP00000002069	ENSACLP00000022166	Neugrin, neurite outgrowth associated.	Inhibitory synaptic factor 1.	0.647
ngrn	mettl11b	ENSACLP00000002069	ENSACLP00000032096	Neugrin, neurite outgrowth associated.	Methyltransferase like 11B.	0.612
ngrn	proser1	ENSACLP00000002069	ENSACLP00000034194	Neugrin, neurite outgrowth associated.	Proline and serine rich 1.	0.661
ngrn	tmem205	ENSACLP00000002069	ENSACLP00000003565	Neugrin, neurite outgrowth associated.	Transmembrane protein 205.	0.654
proser1	insyn1	ENSACLP00000034194	ENSACLP00000022166	Proline and serine rich 1.	Inhibitory synaptic factor 1.	0.650
proser1	mettl11b	ENSACLP00000034194	ENSACLP00000032096	Proline and serine rich 1.	Methyltransferase like 11B.	0.615
proser1	ngrn	ENSACLP00000034194	ENSACLP00000002069	Proline and serine rich 1.	Neugrin, neurite outgrowth associated.	0.661