STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfrp1ADP-ribosylation factor related protein 1. (207 aa)    
Predicted Functional Partners:
ENSACLP00000036802
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.904
ENSACLP00000036839
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.904
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.893
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.866
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
   
 
 0.852
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.823
vps53
VPS53 subunit of GARP complex.
     
 0.809
ENSACLP00000016878
RAB6A, member RAS oncogene family.
    
 0.804
LOC113007782
RAB41, member RAS oncogene family.
    
 0.804
LOC113016723
RAB6B, member RAS oncogene family a.
    
 0.804
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.