ENSACLP00000003633 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000003633

SEFIR domain-containing protein. (577 aa)

Predicted Functional Partners:

ENSACLP00000012345

0.938

ENSACLP00000037794

0.938

ENSACLP00000037857

0.938

ENSACLP00000029407

0.925

LOC113027178

0.920

LOC113027215

0.920

traf6

0.914

ENSACLP00000017660

0.880

ENSACLP00000037776

0.880

ENSACLP00000037851

0.880

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003633	ENSACLP00000012345	ENSACLP00000003633	ENSACLP00000012345	SEFIR domain-containing protein.	Uncharacterized protein.	0.938
ENSACLP00000003633	ENSACLP00000017660	ENSACLP00000003633	ENSACLP00000017660	SEFIR domain-containing protein.	Uncharacterized protein.	0.880
ENSACLP00000003633	ENSACLP00000029407	ENSACLP00000003633	ENSACLP00000029407	SEFIR domain-containing protein.	SEFIR domain-containing protein.	0.925
ENSACLP00000003633	ENSACLP00000037776	ENSACLP00000003633	ENSACLP00000037776	SEFIR domain-containing protein.	Uncharacterized protein.	0.880
ENSACLP00000003633	ENSACLP00000037794	ENSACLP00000003633	ENSACLP00000037794	SEFIR domain-containing protein.	Uncharacterized protein.	0.938
ENSACLP00000003633	ENSACLP00000037851	ENSACLP00000003633	ENSACLP00000037851	SEFIR domain-containing protein.	annotation not available	0.880
ENSACLP00000003633	ENSACLP00000037857	ENSACLP00000003633	ENSACLP00000037857	SEFIR domain-containing protein.	Interleukin 17a/f1.	0.938
ENSACLP00000003633	LOC113027178	ENSACLP00000003633	ENSACLP00000037974	SEFIR domain-containing protein.	Uncharacterized protein.	0.920
ENSACLP00000003633	LOC113027215	ENSACLP00000003633	ENSACLP00000038074	SEFIR domain-containing protein.	Uncharacterized protein.	0.920
ENSACLP00000003633	traf6	ENSACLP00000003633	ENSACLP00000016510	SEFIR domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.914
ENSACLP00000012345	ENSACLP00000003633	ENSACLP00000012345	ENSACLP00000003633	Uncharacterized protein.	SEFIR domain-containing protein.	0.938
ENSACLP00000012345	ENSACLP00000017660	ENSACLP00000012345	ENSACLP00000017660	Uncharacterized protein.	Uncharacterized protein.	0.870
ENSACLP00000012345	ENSACLP00000029407	ENSACLP00000012345	ENSACLP00000029407	Uncharacterized protein.	SEFIR domain-containing protein.	0.511
ENSACLP00000012345	ENSACLP00000037776	ENSACLP00000012345	ENSACLP00000037776	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSACLP00000012345	ENSACLP00000037794	ENSACLP00000012345	ENSACLP00000037794	Uncharacterized protein.	Uncharacterized protein.	0.871
ENSACLP00000012345	ENSACLP00000037851	ENSACLP00000012345	ENSACLP00000037851	Uncharacterized protein.	annotation not available	0.899
ENSACLP00000012345	ENSACLP00000037857	ENSACLP00000012345	ENSACLP00000037857	Uncharacterized protein.	Interleukin 17a/f1.	0.871
ENSACLP00000017660	ENSACLP00000003633	ENSACLP00000017660	ENSACLP00000003633	Uncharacterized protein.	SEFIR domain-containing protein.	0.880
ENSACLP00000017660	ENSACLP00000012345	ENSACLP00000017660	ENSACLP00000012345	Uncharacterized protein.	Uncharacterized protein.	0.870
ENSACLP00000017660	ENSACLP00000037794	ENSACLP00000017660	ENSACLP00000037794	Uncharacterized protein.	Uncharacterized protein.	0.841